PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_5968FA56C.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 197aa    MW: 21143.9 Da    PI: 9.8235
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_5968FA56C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-2961120159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dgy+WrKYGqK+ k++++pr+Y+rC++a +C+vkkkv+rsa+d++v++ tY g+Hnh 
  Traes_7DL_5968FA56C.1  61 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApSCQVKKKVQRSADDKTVLVATYDGDHNHA 120
                            58***************************99****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.37356122IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-2860122IPR003657WRKY domain
SuperFamilySSF1182902.75E-2560122IPR003657WRKY domain
SMARTSM007741.1E-3261121IPR003657WRKY domain
PfamPF031064.0E-2462119IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
PLAAAGSGVF AVSVNVSPDQ AECTSVHEPC DSKRVRADDV KASRVSKLYV HADPSDLSLV  60
VKDGYQWRKY GQKVTKDNPC PRAYFRCSFA PSCQVKKKVQ RSADDKTVLV ATYDGDHNHA  120
PPPKQQGSGG RKRGGAAVLH VSPAPVLVQE QRKHEASTAD QVADRKNLVE QMAATLTRDP  180
GFKAALVSAL SGRIPVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-2146123175WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8273990.0KR827399.1 Triticum aestivum WRKY48 transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641578.12e-70PREDICTED: probable WRKY transcription factor 60
SwissprotQ9C5T42e-49WRK18_ARATH; WRKY transcription factor 18
SwissprotQ9SAH72e-49WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLW5HZS41e-143W5HZS4_WHEAT; Uncharacterized protein
STRINGMLOC_70190.11e-113(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.11e-48WRKY DNA-binding protein 60
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]